Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------------------MGRHKATIEGLV--MKERYYSHRAPGTERWITQPVCKVTRTEPIFEGYIDIEPIEIGGKVYIPGLNEYVIVTDRQRNIHNEWTYQTDRVIKTIIDEKSLKECEEHNNKKAKNNDTQNQRQIKTSWWQRLTKKD----------------------------------------------------------------------------------------------------------------------------------------------------------
3MF2 Chain:A ((37-335))ADPLDHLADKLFHSMGSDGVYARTALYESIVERLAALITSHREAGTEALRFPPVMSRAQLEKS--GYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPADLVLS-----PAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASDPFFGRVGQMKAVSQKQQQLKFELLIPLRSEEQPTACMSFNYHREHFGTTWGIQDANGEPAHTGCVAFGMDRLAVAMFHTHGTDLSAWPAKVRDILGLQPH


General information:
TITO was launched using:
RESULT:

Template: 3MF2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 259 5604 21.64 45.19
target 2D structure prediction score : 0.32
Monomeric hydrophicity matching model chain A : 0.58

3D Compatibility (PKB) : 21.64
2D Compatibility (Sec. Struct. Predict.) : 0.32
1D Compatibility (Hydrophobicity) : 0.58
QMean score : 0.003

(partial model without unconserved sides chains):
PDB file : Tito_3MF2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3MF2-query.scw
PDB file : Tito_Scwrl_3MF2.pdb: