Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-MEKKNITLTILLTNLFIAFLGIGLVIPVTPTIMNEL-HLSGTAVGYMVACFAITQLIVSPIAGRWVDRFGRKIMIVIGLLFFSVSEFLFGI----GKTVEMLFISRMLGGISAAFIMPGVTAFIADITTIKTRPK--ALGYMSAAISTGFIIGPGIGGFLAEVHSRLPFFFAAAFALLAAILSILTLREPERNPENQEIK------GQKTGFKRIFA-PMYFIAFLIILISSFGLASFESLFALFVDHKFG--FTASDIAIMITGGAIVGAITQVVLFDRFTRWFGEIHLIRYSLILSTSLVFLLTTVHSYVAILLVTVTVFVGFDLMRPAVTTYLSKI--AGNEQGFAGGMNSMFTSIGNVFGPIIGGMLFDI-DVNYPFYFATVTLAIGIALTIAW--------KAPAHLKAST
1PV6 Chain:A ((1-417))MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLRRQVNEVA


General information:
TITO was launched using:
RESULT:

Template: 1PV6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1831 -266488 -145.54 -685.06
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -145.54
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.365

(partial model without unconserved sides chains):
PDB file : Tito_1PV6.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1PV6-query.scw
PDB file : Tito_Scwrl_1PV6.pdb: