Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMCPLMAENHEVIEEGNSSELPLSAEDAKKLTELAENVLQGWDVQAEKIDVIQGNQMALVWKVHTDSGAVCLKRIHR---PEKKALFSIFAQ--DYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWIEGRPFELTV--KQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAE------AEKEDPFSQLYLQEIDGF--IEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGEN--EQIWVIDLDTVSFDLPIRDLRKMIIP--------LLDTTGV-WDDETFNVMLNAY--ESRAPLTEEQKQVM-FIDMLFPYELYDVIREKYVRKSA-LPKEELESAFEYERIKANALRQLI-----------------
4OCV Chain:A ((24-378))-------------------------TNEALFDVASHF--ALEGTVDSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFPDTVNLMRNVELVTSTLKAQGKETLDIVRTTSGDTWAEIDGGAWRVYKFIEHTMSYNLVPNPDVFREAGRAFGDFQNFLSGFDANQ-------LTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRDGSIPLRVT---------------HNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNLLTMECGMRFLADYLEGDVYFATKYPEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT


General information:
TITO was launched using:
RESULT:

Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1465 5462 3.73 17.73
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 3.73
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.410

(partial model without unconserved sides chains):
PDB file : Tito_4OCV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4OCV-query.scw
PDB file : Tito_Scwrl_4OCV.pdb: