Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSAFTLYPAIDMRNGKCVRLVQGDYNKETIYGDSPYDMAELFEKEGAEWIHLVDLDGAKEGKRVNDRHVIEIAQKLNLKVEIGGGIRSENDVYEYLSAGVERVILGSSAVSNPPFVKKMLKQY-GEKIAIGLDARNG-----FVSTEGWLETSTLKATELGKELANEGAEVFIFTDIATDGMLSGPNVKSTVELAKE-TGKSVIASGGVSSVADLEALARNEADGVSGAIIGKALYTNQFTLSEALERVKRK
5A5W Chain:A ((1-244))----MIIPALNLIDGTVVRLHQGDYARQRDYGNDPLPRLQDYAAQGAGVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRTEEDVAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRAGTLAGSNVSLYEEVCARYPQIAFQSSGGIGDIDDIAALRG---TGVRGVIVGRALLEGKFTVKEAIQCWQN-


General information:
TITO was launched using:
RESULT:

Template: 5A5W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1346 -45135 -33.53 -190.44
target 2D structure prediction score : 0.78
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -33.53
2D Compatibility (Sec. Struct. Predict.) : 0.78
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.650

(partial model without unconserved sides chains):
PDB file : Tito_5A5W.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5A5W-query.scw
PDB file : Tito_Scwrl_5A5W.pdb: