Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDDADLDLVRRTFAAFARGDLAELTQCFAPDVEQFVPG---KHALAGVFRGVDNVVACLGDTAAAADGTMTVTLEDVLSNTDGQVIAVYRLRASRAGKVLDQREAILVTVAGGRITRLSEFYADPAATESFWA-
3DM8 Chain:A ((1-135))
MTEHSLWRFSRALHRALNDRQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRIYRYHRESVMLGIDSAASMVRYSLTAAGTNRPISVRMALFTQFQNGRLTNLRMVLDTFDLVEQALGR
General information:
TITO was launched using:
RESULT:
Template:
3DM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -53213 for 938 contacts (-56.7/contact) +
2D Compatibility (PS) -14090 + (NN) -2715 + (LL) 0
1D Compatibility (HY) -5200 + (ID) 1100
Total energy: -76318.0 ( -81.36 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_3DM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DM8-query.scw
PDB file :
Tito_Scwrl_3DM8.pdb
: