Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSEHQSLPAPEASTEVRVAIVGVGNCASSLVQGVEYYYNADDTSTVPGLMHVRFGPYHVRDVKFVAAFDVDAKKVGF-DLSDAIFASENNTIKIADVAPTNVIVQRGPTLDGIGKYYADTIELSDAEPVDVVQALKEAKVDVLVSYLPVGSEEADKFYAQCAIDAGVAFVNALPVFIA-SDPVWAKKFTDARVPIVGDDIKSQVGATITHRVLAKLFEDRGVQLDRTMQLNVGGNMDFLNMLERERLESKKISKTQAVTSNLKREFKTKDVHIGPSDHVGWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDAVRAAKIAKDRGIGGPVIPASAYLMKSPPEQLPDDIARAQLEEFIIG |
| 3DO5 Chain:A ((2-158)) | --------------MIKIAIVGFGTVGQGVAELLIRKREE-------------IE-KAIGEFKVTAVADSKSSISGDFSLVEALRMKR----------ETGML----------------------RDDAKAIEVVRSADYDVLIEASVTR---EGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEAT--VGGAMPVVKLAKRYLA------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3DO5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -125964 for 1166 contacts (-108.0/contact) +
2D Compatibility (PS) -15499 + (NN) 1681 + (LL) 12272
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -131060.0 ( -112.40 by residue)
QMean score : 0.538
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