Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------MTPFDDPQAELAWMFLQSLCEGGDLDEGFALLSNDFTYWSIVTRTELDKKTFRRAVERR-KQVFEVNIELIRCVNEGETVVVEGHCDGV-SADRTRYDSPFVCIFETRDGMIISLREYSDTQSLAEVYPVACATPGRC
1NWW Chain:A ((5-149))
IEQPRWASKDSAAGAASTPDEKIVLEFMDALTSN-DAAKLIEYFAEDTMYQNMPLPPAYGRDAVEQTLAGLFTVMSIDAVETFHIGSSNGLVYTERVDVLRALPTGKSYNLSILGVFQLTEGKITGWRDYFDLREFEEAVDL----PLRG
General information:
TITO was launched using:
RESULT:
Template:
1NWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67445 for 957 contacts (-70.5/contact) +
2D Compatibility (PS) -14316 + (NN) -6372 + (LL) 224
1D Compatibility (HY) -4000 + (ID) 950
Total energy: -92859.0 ( -97.03 by residue)
QMean score : 0.524
(partial model without unconserved sides chains):
PDB file :
Tito_1NWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NWW-query.scw
PDB file :
Tito_Scwrl_1NWW.pdb
: