Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRFLTSIVAWLRAGYPEGIPPTDSFAVLALLCRRLSHDEVKAVANELMRLGDFDQIDIGVVITHFTDELPS-----PEDVERVRARLAAQGWPLDDVRDREEHA
2HGC Chain:A ((5-82))
-----KLRYAILKEIFEGNTPLSENDI-------GVTEDQFDDAVNFLKREGY-------IIGVHYSDDRPHLYKLGPELTEKGENYLKENG--------TWSKA
General information:
TITO was launched using:
RESULT:
Template:
2HGC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6421 for 477 contacts (-13.5/contact) +
2D Compatibility (PS) -8047 + (NN) -5944 + (LL) 2148
1D Compatibility (HY) -400 + (ID) 850
Total energy: -19514.0 ( -40.91 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_2HGC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HGC-query.scw
PDB file :
Tito_Scwrl_2HGC.pdb
: