Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDAAQVIEPAHAGQDVDEAAVAARELSGAERALVGDLVRQARAEGVALTGPDGLLKALTKTVLEAALQEEMTEHLGYDRHAAAGRGSGNSRNGSRNKKVITDACGQVEIAVPRDRNGTFEPVIVGKRKRRVTDVDRVVLSLYAKGLTTGEIAAHFADVYGVSVSKDTISRITDRVIEEMQAWWSRPLEKVYAAVFIDAIMVKIRDGQVRNRPVYAAIGVDLDGHKDILGMWAGEGDGESAKFWLAVLTDLRNRGVKDIFFLVCDGLKGLPDSVSAAFPLATVQTCIIHL-IRNTFRYASRKYWDKISVDLKPIYTAASAAEARLRYEEFAEKWGKPYPAITRLWDSAWEEFIPFLDYDVEIRRVPCST----NAIESLNARYRRAVRA-----RGHFPNEQSALKTLYL-VTRSLDPKGTGQTKWAVRWKPALNALAITFADRMPAAEER |
| 4HNE Chain:A ((2-384)) | --------------PLGSPEFAAQAQALAAQAAAAAHAAQAHRERNEFP-EDPEFEAVVRQAELAIERCIFPERI---------------YQGSSGSYFVKDPQGR-IIAVFKPKNEEPYGHLNPKWTKWLQKFGRDCLVLNQGYLSEAGASLVDQKLELNIVPRTKVVYLASETFNYSAIDRVKSRGKRLA----------LRFNRIGLPPKVGSFQLFVEGYKD-------------ADYWLRRFEA-----------------EPLPENTNRQLLLQFERLVVLDYIIRNTDR--GNDNW-LIKYDCPPVIKVAAIDNGLAFPLKHPDSW-RAYP-----FYWAWLPQAK-VPFSQEIKDLILPKISDPNFVKDLEEDLYELFKKDPGFDRGQFHKQIAVMRGQILNLTQALKD----------------NKSPLHLVQMPPVIVET |
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General information:
TITO was launched using:
| RESULT:
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Template: 4HNE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -44242 for 2516 contacts (-17.6/contact) +
2D Compatibility (PS) -36039 + (NN) -11434 + (LL) 5700
1D Compatibility (HY) -11200 + (ID) 3300
Total energy: -100515.0 ( -39.95 by residue)
QMean score : 0.287
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