Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGTPQPRALGPDALD--VSTDDLAGLLAGNTGRIKTVITDQKVIAGIGNAYSDEILHVAKISPFATAGKLSGAQLTCLHEAMASVLSDAVRR--SVGQGAAMLKGEK---RSGLRVHARTGLPCPVCGDTVREVSFADKSFQYCPTCQTGGKALADRRMSRLLK
2F5S Chain:A ((134-273))
---------LGPEPLSPAFSPAVLAERAVKTKRSVKALLLDCTVVAGFGNIYVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGSTVRTYVNTQGEAGTFQHHLYVYGRQGNPCKRCGTPIEKTVVAGRGTHYCPRCQ----------------
General information:
TITO was launched using:
RESULT:
Template:
2F5S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71265 for 997 contacts (-71.5/contact) +
2D Compatibility (PS) -14189 + (NN) -5398 + (LL) 1372
1D Compatibility (HY) -5600 + (ID) 2350
Total energy: -97430.0 ( -97.72 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_2F5S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F5S-query.scw
PDB file :
Tito_Scwrl_2F5S.pdb
: