Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSVANLKDLLAEGVSGRGVLVRSDLNVPLDEDGTITDAGRIIASAPTLKALLDADAK-VVVAAHLGRPKDGPDP-TLSLAPVAVALGEQLGRHVQLAGDVVGADALARAEGLTGGDILLLENIRFDKRETSKNDDDRRALAKQLVE-----LVGTGGVFVSDGFGVVHRKQASVYDIATLLPHYAG-TLVADEMRVLEQLTSSTQRPYAVVLGGSKVSDKLGVIESLATKADSIVIGGGMCFTFLAA-QGFSVGTSLLEDDMIEVCRGLLETYHD---VLRLPVDLVVTEKFAADSPP-QTVDVGAVPNGLMGLDIGPGSIKRFSTLLSNAGTIFWNGPMGVFEFPAYAAGTRGVAEAIVAATGKGAFSVVGGGDSAAAVRAMNIPEGAFSHISTGGGASLEYLEGKTLPGIEVLSREQPTGGVL |
2X14 Chain:A ((13-415)) | -------------VKGKRVVMRVDFNVPM-KNNQITNNQRIKAAVPSIKFCLDNGAKSVVLMSHLGRPDGVPMPDKYSLEPVAVELKSLLGKDVLFLKDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKG-------EPAKIEAFRASLSKLGDVYVNDAFGTAHRAHSSM--VGVNLPQKAGGFLMKKELNYFAKALESPERPFLAILGGAKVADAIQLINNMLDKVNEMIIGGGMAFTFLKVLNNMEIGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTADKFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPVGVFEWEAFARGTKALMDEVVKATSRGCITIIGGGDTATCCAKWNT-EDKVSHVSTGGGASLELLEGKVLPGVDALSN-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2X14.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -256998 for 3396 contacts (-75.7/contact) +
2D Compatibility (PS) -40978 + (NN) -15641 + (LL) 1280
1D Compatibility (HY) -33200 + (ID) 7750
Total energy: -353287.0 ( -104.03 by residue)
QMean score : 0.582
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