Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAYKTVVVGTDGSDSSMRAVDRAAQIAGA-DAKLIIASAYLPQHED--ARAADILKDE-SYKVTGTAPIYEILHDAKERAHNAGAKN--VEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT
3HGM Chain:A ((1-147))
--MFNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATELGVPADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV---
General information:
TITO was launched using:
RESULT:
Template:
3HGM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68553 for 1090 contacts (-62.9/contact) +
2D Compatibility (PS) -14861 + (NN) 1934 + (LL) 328
1D Compatibility (HY) -6000 + (ID) 1750
Total energy: -88902.0 ( -81.56 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_3HGM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3HGM-query.scw
PDB file :
Tito_Scwrl_3HGM.pdb
: