Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFVITNPEALTVAATEVRRIRDRAIQSDAQV-APMTTAVRPPAADLVSEKAATF------LVEYARKYRQTIAAAAVVLE------EFAHALTTGADKYATAEADNIKTFS---------------------
4D53 Chain:A ((4-136))
MGHKIDTKEDMKILYSEIAELRKKLNLNHLEIDDTLEKVAKEYAIKLGENRTITHTLFGTTPMQRIHKYDQSFNLTREILASGIELNRVVNAWLNSPSHKEALINTDTDKIGGYRLKTTDNIDIFVVLFGKRK
General information:
TITO was launched using:
RESULT:
Template:
4D53.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18064 for 560 contacts (-32.3/contact) +
2D Compatibility (PS) -10270 + (NN) 861 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -30523.0 ( -54.51 by residue)
QMean score : 0.222
(partial model without unconserved sides chains):
PDB file :
Tito_4D53.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4D53-query.scw
PDB file :
Tito_Scwrl_4D53.pdb
: