Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSQIMYNYPAMMAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSMSGTHESNTMAMLARDGAEAAKWGG
4LWS Chain:A ((35-128))
--QSAVDRAAMAQAAQDIEQSANAIRGMQNQLASAKDQLRSHWEGDASMAFEAVFNRFNEDFSRVLKALDGMHESLVQTRITYEAREEAAQQSVNR
General information:
TITO was launched using:
RESULT:
Template:
4LWS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8468 for 478 contacts (-17.7/contact) +
2D Compatibility (PS) -10353 + (NN) -2227 + (LL) 180
1D Compatibility (HY) -5200 + (ID) 950
Total energy: -27018.0 ( -56.52 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_4LWS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWS-query.scw
PDB file :
Tito_Scwrl_4LWS.pdb
: