Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----MDIAGRSLVYFSSVSENTHRFVQKLGIPATRIPLHGRIEVDEPYVLILPTYGGGRANPGLDAGGYVPKQVIAFLNNDHNRAQLRGVIAAGNTNFGAEFCYAGDVVSRKCSVPYLYRFELMGTEDDVAAVRTGLAEFWKEQTCHQPSLQSL
1RLJ Chain:A ((1-135))
ENLYFQSNAMVQIIFDSKTGNVQRFVNKTGFQQIRKV-DEMDHVDTPFVLVTYTTNFGQ----------VPASTQSFLEKYAHL--LLGVAASGNKVWGDNFAKSADTISRQYQVPILHKFELSGTSKDVELFTQEVERVVTKSSAKM------
General information:
TITO was launched using:
RESULT:
Template:
1RLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98562 for 1048 contacts (-94.0/contact) +
2D Compatibility (PS) -13942 + (NN) -7054 + (LL) 460
1D Compatibility (HY) -5600 + (ID) 2050
Total energy: -126748.0 ( -120.94 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_1RLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RLJ-query.scw
PDB file :
Tito_Scwrl_1RLJ.pdb
: