Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTTQATPLTPVISRHWDDPESWTLATYQRH-DRYRGY--QALQKALTMPPDDVISIVK--DSGLRGRGGAGFATGTKWSFIPQGDTGAAAKPHYLVVNADESEPGTCKDIPLMLATPHVLIEGVIIAAYAIRAHHAFVYVRGEVVPVLRRL-HNAVAE-AYAAGFLGRNIGGSGFDL------ELVVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYGCPTVINNVETIASVPSIILGGIDWFRSMGSEKSPGFTLYSLSGHVTRPGQYEAPLGITLRELLDYAGGVRAGHRLKFWTPGGSSTPLLTDEHLDVPLDYEGVGAAGSMLGTKALEIFDETTCVVRAVRRWTEFYKHESC--GKCTPCREGTFWL-----------DKIYERLETGRGSHEDIDKLL--DISDSILGKSFCALGDGAASPVMSSIKHFRDEYLAHVEGGGCPFDPRDSMLVANGVDA |
| 2GA9 Chain:D ((2-469)) | -NITLKIIETYLGRVPSVNEYHMLKSQARNIQKITVFNKDIFVSLVKKNKKRFFSDVNTSASEIKDRILSYFSKQTQTY--NIGKLFTIIELQSVLVTTYTDILG---VLTINVTSMEELARDMLNSMNVAVVSSLVKNVNKLMEEYLRRHNKSCICYGSYSLYLINPNIRYGDIDILQTNSRTFLIDLAFLIKFITGNNIILSKIPYLRNYMVIKDE----NDNHIIDSFNIRQDTMNVVPKIFIDNIYIV-DPTFQLLNMIKMFSQIDRLEDLSKDPEKFNARMATMLEYVRYTHG------IVFDGKRNNMPMKCIIDENNRIVTVTTKDYFSFKKCLVYLDENVLSSDILDLNADTSCDFESVTNSVYLIHDNIMYTYFSNTILLSDKGKVHEISARGLCAHILLYQMLTSGEYKQCLSDLLNSMMNRDKIPIYSHTE--RDKK----PGRHGFINIEKDIIVF----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GA9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -65133 for 3199 contacts (-20.4/contact) +
2D Compatibility (PS) -42664 + (NN) 5446 + (LL) 2228
1D Compatibility (HY) -18400 + (ID) 2550
Total energy: -121073.0 ( -37.85 by residue)
QMean score : 0.056
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