Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLVGRRAVRVLCYVPPMPRRLRHPLADLRLPRWVPCLALLALSGCSTVSYYGQLASGQFALLRAREPAAAVIADPQRDARLRERLAKAEKARQFASERLGLPDNRSYRLYADIGRPYVVWNVFATPELSLQPVTHCFPIAGCVAYRGYYSEAAARAEAARQRALGDDVYVGGVQAYSTL----GWFDDPILSSMLRWDDERLATLIFHELAHQKFYLRDDTAFNESFATFVEQEGTRQWREYRGLPPADGREEKRREQFTALVLASRARLEALYAGP-LDDAAKRAGKAAEFQRLRREYAALSQRE------WGGESPFKAWIDAPFNNAKLLPFGLYDQWVAAFAVLFRQVGGNWPAFYARVRALGQLPLAERQAALQRLAAAAP |
| 3WO4 Chain:B ((1-301)) | GPESCTSRPHITVVEGEPFYLKH------------C-------SCSLAH---EIETTTKSWYKSSGSQEHVELNPRSSSRIALH----DCVLEFWP--VELNDTGSYFFQMKNYTQKWKLNVIRRNKHS------CFT----------------------ERQVTSKIVE--VKKFFQITCENSYYQTLVNSTSLYKNCKKLLLENNKNPTIKKNAEFEDQGYY-SCVHFLHH---------------NGKLFNITKTFNITIVEDRSNIVPVLLGPKLNHVAVELGK-----NVRLNCSALLNEEDVIYWMFGEENGSDPNIHEEKEMRIMTPEG---KWHASKVLRIENIGESNLNVLYNCTVASTGGTDTKSFILVRKAD--- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3WO4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -51639 for 1844 contacts (-28.0/contact) +
2D Compatibility (PS) -29082 + (NN) 10593 + (LL) 6260
1D Compatibility (HY) -7200 + (ID) 2650
Total energy: -73718.0 ( -39.98 by residue)
QMean score : -0.023
|
|
|