Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSQALSIVASGMVSAVGLSAPASCAAIRCALDNFQETRFIDQGGEWLLAASVPLEQPWRGRAKLLK------MAARAIDEALRGQPDLDCTELPLLLCVAEGDRPGRCAGLDESFLRDLEGELGRRFHPSSALIARGRVGGAVALLNARKLIQGG-CRQVLVAGVDSFVSGPTLAAYEARERLLTSQNSNGFIPGEGAAAVLVAA-PLHEEAPQLLCIGLGFGVEKATVESEDLPLRADG----------LSQAVRAALAEAGCGLEQMDYRLTDISGEQYYFKEASLTL-----SRNLRVLKPKFDL------WHPADCIGECGAAIGPALLAVALAASRKG----YGDGPNVFCHLGNDAG-ERAAALLSYRRVRAA |
1HNJ Chain:A ((1-317)) | --MYTKIIGTGSYLPEQVRTNADLEKMV------------DTSDEWIVTRTGIRERHIAAP-----NETVSTMGFEAATRAIEMA-GIEKDQIGLIVVATTSATH-----AFPSAACQIQSMLGIK-GCPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPT------DRGTI-----IIFGDGAGAAVLAASE------EPGIISTHLHADGSYGELLTLPN---ADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNL-D-RSQLDWLVPHQANLRIISATAKKLGMSMDNVV-VTLDRHGNTSAASVPCALDEAVRD----GRIKPG---QLVLLEAFGGGFTWGSALVRF------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HNJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161420 for 2577 contacts (-62.6/contact) +
2D Compatibility (PS) -29502 + (NN) -9270 + (LL) 3588
1D Compatibility (HY) -4000 + (ID) 2650
Total energy: -203254.0 ( -78.87 by residue)
QMean score : 0.332
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