Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MSTLPPCPQCNSEYTYEDGALLVCPECA--------HEWSPNEAATASDDGKVIKDSVGNVLQDGDTITVIKDLKVKGSSLVVKVGTKVKNIRLVDGDHDIDCKIDGIGAMKLKSEFVRKV
3F62 Chain:A ((18-125))
GAMVETKCP--NLDIVTSSG-EFHCSGCVEHMPEFSYMYWLAKDMKS-DEDTKFIEH-LGDGINEDETVRTTD-----GGITTLRKVLHVTDTNKFA-HYRFTCVLTTLDGVSKKNIWL---
General information:
TITO was launched using:
RESULT:
Template:
3F62.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21784 for 652 contacts (-33.4/contact) +
2D Compatibility (PS) -10487 + (NN) 3073 + (LL) 1040
1D Compatibility (HY) -2800 + (ID) 800
Total energy: -31758.0 ( -48.71 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_3F62.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F62-query.scw
PDB file :
Tito_Scwrl_3F62.pdb
: