Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRVLYPGTFDPITKGHGDLIERASRLFDHVIIAVAASPKKNPLFSLEQRVALAQEVTKHLPNVEVVGFST-LLAHFVKEQKANVFLRGLRAVSDFEYEFQLANMNRQLAPDVESMFLTPSEKYSFISSTLVREIAALGGDISKFVHPAVADALAERFKR
3ND6 Chain:F ((6-158))
----LFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFI------LFTPEEKKYLIEEATKEMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQK---
General information:
TITO was launched using:
RESULT:
Template:
3ND6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111138 for 1080 contacts (-102.9/contact) +
2D Compatibility (PS) -16069 + (NN) -8250 + (LL) 456
1D Compatibility (HY) -14400 + (ID) 3300
Total energy: -152701.0 ( -141.39 by residue)
QMean score : 0.518
(partial model without unconserved sides chains):
PDB file :
Tito_3ND6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ND6-query.scw
PDB file :
Tito_Scwrl_3ND6.pdb
: