Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTCAYRREIHHAHVAIRDWLAGDSRADALDALMARFAEDFSMVTPHG--------VVLDKTALGELFRSKGGTRPGLRIEIDGESLLASGVDGATLAYREIQSD--AAGRSERLSTVVLHRDDEGRL-YWRHLQETFCG
3DM8 Chain:A ((5-122))
----------SLWRFSRALHRALND-RQTEELATIIDDNIDWAIYGPIDMFPFFGARQGKAAVLEVCRQIADSVRIYRYHRESVM---LGIDSAASMVRYSLTAAGTNRPISVRMALFTQFQ-NGRLTNLRMVLDTFDL
General information:
TITO was launched using:
RESULT:
Template:
3DM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26624 for 716 contacts (-37.2/contact) +
2D Compatibility (PS) -10978 + (NN) -650 + (LL) 1668
1D Compatibility (HY) -800 + (ID) 750
Total energy: -38134.0 ( -53.26 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_3DM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DM8-query.scw
PDB file :
Tito_Scwrl_3DM8.pdb
: