Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSIKKNLGLLAMTAALAACASNPNDLPDFPEHEYAATQQVGEGVINGDLYLTSASGAIQKGTNTKVALEPATSYMKAYYAKFGNLDAAKRD---PDVQPPVLDPRRATYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLTR
1XPN Chain:A ((25-170))
------------------------NDLPDFPEHEYAATQQVGGGVINGDLYLTSASGAIQKGTNTKVALEPATSYMKAYYA-KFGNL--DAAKRDPDVQPPVLDPRRATYVREATTDQNGRFDFDHIPNGTYYISSELTWSAQSDGKTITEGGTVTKLVTVSGSQPQKVLLTR
General information:
TITO was launched using:
RESULT:
Template:
1XPN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13294 for 986 contacts (-13.5/contact) +
2D Compatibility (PS) -15392 + (NN) -9969 + (LL) 2424
1D Compatibility (HY) -14000 + (ID) 6700
Total energy: -56931.0 ( -57.74 by residue)
QMean score : 0.476
(partial model without unconserved sides chains):
PDB file :
Tito_1XPN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XPN-query.scw
PDB file :
Tito_Scwrl_1XPN.pdb
: