Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLQVSVYRYNPDKDA-APYMQDFQVDTNGKDVMVLDVLALIK-EQDEGFSYRRSCREGVCGSDGMNINGKNGLACITPLSAAGLKGGKLVIRPLPGLPVIRDLVVDMSIFYKQYEKVKPFLQ--NDTPAPAIERLQTPEEREKLDGLYECILCACCSTSCPSFWWNPDKFLGPAALLQAYRFLADSRDTKTEERLASLDDPFSVFRCRGIMNCVNVCPKGLNPTKAIGHVRNMLLQSGT
3SFD Chain:B ((13-242))
--KFAIYRWDPDKTGDKPHMQTYEIDLNNCGPMVLDALIKIKNEIDSTLTFRRSCREGICGSCAMNINGGNTLACTRRIDTNLDKVSK--IYPLPHMYVIKDLVPDLSNFYAQYKSIEPYLKKKDESQEGKQQYLQSIEEREKLDGLYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDFTEERLAKLQDPFSLYRCHTIMNCTGTCPKGLNPGKAIAEIKKMMATYKE
General information:
TITO was launched using:
RESULT:
Template:
3SFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113261 for 1707 contacts (-66.4/contact) +
2D Compatibility (PS) -24245 + (NN) -16188 + (LL) 752
1D Compatibility (HY) -24400 + (ID) 6450
Total energy: -183792.0 ( -107.67 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3SFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SFD-query.scw
PDB file :
Tito_Scwrl_3SFD.pdb
: