Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDYQETLYQGYGQRFS--IDNMLHEVRTEHQHLVIFENARMGRVMALDGVIQTTEADEFIYHEMLTHVPILAHGAARRVLIIGGGDGGMLREVAKHKSVERITMVEIDGTVVDMCKEFLPNHSQGAFDDPRLNLVIDDGMRFVATTEERFDVIISDSTDPIGPGEVLFSENFYQACRRCLNEGGILVTQNGTPFMQLEEVRTTAARTDGLFADWHFYQAAVPTYIGGAM-TFAWGSTHEGLRRLPLETLRQRFRDSGIATRYYNADIHLGAFALPQYVLQAIGKQDND
4BP1 Chain:B ((15-280))
------------GQAFSLKIKKILYETKSKYQNVLVFESTTYGKVLVLDGVIQLTEKDEFAYHEMMTHVPMTVSKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG-YEDKRVNVFIEDASKFLENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKKVEYANISIPTYPCGCIGILCCSKTDTGLTKPNKKLESKEFAD----LKYYNYENHSAAFKLPAFLLKEIEN----
General information:
TITO was launched using:
RESULT:
Template:
4BP1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154595 for 2212 contacts (-69.9/contact) +
2D Compatibility (PS) -28264 + (NN) -12330 + (LL) 1008
1D Compatibility (HY) -26800 + (ID) 5200
Total energy: -226181.0 ( -102.25 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_4BP1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BP1-query.scw
PDB file :
Tito_Scwrl_4BP1.pdb
: