Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MSRI-DTPPGFAVYPSASPKAANLPAVDQVLAFEQALGGEPPAAGRRLAGLENGALGERLLQRFAQPLQGL-EADRLELKAMLRAELPLGRQQQTFLLQLLGAVEHAPGGEYLAQLARRE----------LQVLIP--LNGMLDNLVRNSHKLDLES---------------
1MW5 Chain:A ((3-164))
ETDLLMKVRQPVKLY---SVATLFHEFSEVITKLEHSVQKEPT-------SLLSEENWHKQFLKFAQALPAHGSASWLNLDDALQA--VVGNSRSAFLHQLIAKLKSRHLQVLELNKIGSEPLDLSNLPAPFYVLLPESFAARITLLVQDKALPYVRVSMEYWHALEYKGELN
General information:
TITO was launched using:
RESULT:
Template:
1MW5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29808 for 891 contacts (-33.5/contact) +
2D Compatibility (PS) -14329 + (NN) -8368 + (LL) 892
1D Compatibility (HY) -6800 + (ID) 1300
Total energy: -59713.0 ( -67.02 by residue)
QMean score : 0.395
(partial model without unconserved sides chains):
PDB file :
Tito_1MW5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MW5-query.scw
PDB file :
Tito_Scwrl_1MW5.pdb
: