Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELFKEFTFESAHRLPHVPEGHKCGRLHGHSFRVAIHIEGEVDPHTGWIRDFAEIKAIFKPIYEQLDHNYLNDIPGLENPTSENLCRWIWQQLKPLLPELSKVRVHETCTSGCEYRGD
4NTN Chain:D ((6-121))
--LFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
General information:
TITO was launched using:
RESULT:
Template:
4NTN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77861 for 808 contacts (-96.4/contact) +
2D Compatibility (PS) -12735 + (NN) -7495 + (LL) 312
1D Compatibility (HY) -13600 + (ID) 4450
Total energy: -115829.0 ( -143.35 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4NTN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NTN-query.scw
PDB file :
Tito_Scwrl_4NTN.pdb
: