Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALLLSGCLALVLLTQQAAAQTLLVVGDSISAALGL---------DTSQGWVALLQKRLADEG--YDYRVVNASISGDTSAGGLARLPALLAEEKPALVVIELGGNDGLRGM----------APAQLQQNLASMAQKARAEGAKVLLLGIQLPPNY----GPRYIEAFSRVYGAVAAQEKTALVPFFLEGVG----GVQGMMQADGIHPALAAQPRLLENVWPTLKPLL
3RJT Chain:A ((6-215))
------------------EPGSKLVMVGDSITDCGRAHPVGEAPRGGLGNGYVALVDAHLQVLHPDWRIRVVNVGTSGNTVADVARRWEDDVMALQPDYVSLMIGVNDVWRQFDMPLVVERHVGIDEYRDTLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVPFVDVQAEFDRLLAHLNTWVLAPDRVHPYLNGHLVIARAFLTAVGV--
General information:
TITO was launched using:
RESULT:
Template:
3RJT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91289 for 1525 contacts (-59.9/contact) +
2D Compatibility (PS) -19660 + (NN) -7780 + (LL) 2520
1D Compatibility (HY) -12000 + (ID) 2000
Total energy: -130209.0 ( -85.38 by residue)
QMean score : 0.495
(partial model without unconserved sides chains):
PDB file :
Tito_3RJT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RJT-query.scw
PDB file :
Tito_Scwrl_3RJT.pdb
: