Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLRPASPRNEILATLGRFRPALRSVALFTAVINLLMLAPSLYMLQVYDRVLGSGNHMTLLMLTLMVLGLYLLLGALEWVRSLVVIRLGGQLDMQLNQRIYDASFRASLERGEQAAGQALNDLTSLRQFLTGNALFAFFDAPWFPLYLLVIFLFSPWLGLLALAGALLLVLLAWVNESRSREPLAEAGQLSILATQQASANLRQAETLAAMGMLPAMRARWFAQHQAFLARQNLGSERSAAIGATSKGVRLALQSLVLGLGAWLAVDGLITPGMMIAGSILMGRVLSPIDQLIAVWRQWSGARQAYQRLARLLEENPPAALGMPLPAPRGALRVERLCAAAPGREQALLQDLGFALEPGEALGVIGPSGSGKSTLARLLVGAWQPLSGAVRLDGADLRQWSAAALGPHIGYLAQDVQLFAGSIAENIARFAE--VDAEKVVAAARLAGVHDLVLRLPQGYDTRLGDGGAGLSGGQRQRIGLARALYGRPALIVLDEPNASLDEAGEAALAEAIAAMRRQGSSLVLVTHKPAVLALTDKLLLLHGGRLQRFGATAEVLASASPPAAAAPAPAPAPTRPTPAFGFGYRPGPGMPVGGVPGGAAR |
3VX4 Chain:D ((51-257)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LSDINLSIKKGSKVSLVGASGSGKTTLAKLIVNFYEPNKGIVRINGNDLKVIDKTALRRHISYLPQQAYVFSGSIMDNLVLGAKEGTSQEDIIRACEIAEIRSDIEQMPQGYQTELSD-GAGISGGQKQRIALARALLTQAPVLILDAATSSLDILTEKKIISNLLQMTEK--TIIFVAHRLSISQRTDEVIVMDQGKIVEQGTHKELLA-------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VX4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -144446 for 1580 contacts (-91.4/contact) +
2D Compatibility (PS) -22475 + (NN) -10871 + (LL) 29652
1D Compatibility (HY) -19200 + (ID) 3750
Total energy: -171090.0 ( -108.28 by residue)
QMean score : 0.507
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