Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKPYDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGLSRHA
4WJZ Chain:D ((9-248))
----NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMAL-----NVTNPESIEAVLKAITDEFGGVDILVNNA-----------------DIMETNLTSIFRLSKAVLRGMMKKRQGRIINVASVV--------ANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMT---------K--NDEQRTATLA---QVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGM----
General information:
TITO was launched using:
RESULT:
Template:
4WJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188553 for 1776 contacts (-106.2/contact) +
2D Compatibility (PS) -23726 + (NN) -12725 + (LL) 3520
1D Compatibility (HY) -9200 + (ID) 4100
Total energy: -234784.0 ( -132.20 by residue)
QMean score : 0.628
(partial model without unconserved sides chains):
PDB file :
Tito_4WJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WJZ-query.scw
PDB file :
Tito_Scwrl_4WJZ.pdb
: