Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLLPLAVLAALSSVHVASAQAADVSAAVGATGQSGMTYRLGLSWDWDKSWWQTSTGRLTGYWDAGYTYWEG--GDEGAGKHSLSFAPV---FVYEFAGDSIKPFIEAGIGVAAFSGTRVGDQNLGSSLNFEDRIGAGLKFANGQSVGVRAIHYSNAGLKQPNDGIESYSLFYKIPI
4IY6 Chain:A ((62-121))
-------------------------------------------------------------GARDADTKIWNGMVGELVYGKADIAIAPLTITYVREEVIDFSKPFMSLGISIMIKKGTPI---------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4IY6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5377 for 225 contacts (-23.9/contact) +
2D Compatibility (PS) -5606 + (NN) -1386 + (LL) 6628
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -8741.0 ( -38.85 by residue)
QMean score : -0.256
(partial model without unconserved sides chains):
PDB file :
Tito_4IY6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IY6-query.scw
PDB file :
Tito_Scwrl_4IY6.pdb
: