Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRIAVVGAAGRMGKNLIEAVQQTGGAAGLTAAVDRPDSTLVGADAGELAGLGRIGVPLSGDLGKVCEEFDVLIDFTHPSVTLKNIEQCRKARRAMVIGTTGFSADEKLLLAEAAKDIPIVFAANFSVGVNLCLKLLDTAARVLGDEVDIEIIEAHHRHKVDAPSGTALRMGEVVAQALGRDLQEVAVYGREGQTGARARETIGFATVRAGDVVGDHTVLFAAEGERVEITHKASSRMTFARGAVRAALWLEGKENGLYDMQDVLGLR
1VM6 Chain:A ((13-226))
-MKYGIVGYSGRMGQEIQKVFSE-KG-HELVLKVDVNGV------------------------E-ELDSPDVVIDFSSPEALPKTVDLCKKYRAGLVLGTTALKEEHLQMLRELSKEVPVVQAYNFSIGINVLKRFLSELVKVLE-DWDVEIVETHHRFKKDAPSGTAILLESALGK------------------------SVPIHSLRVGGVPGDHVVVFGNIGETIEIKHRAISRTVFAIGALKAAEFLVGKDPGMYSFEEVIFG-
General information:
TITO was launched using:
RESULT:
Template:
1VM6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -151287 for 1774 contacts (-85.3/contact) +
2D Compatibility (PS) -23366 + (NN) -10479 + (LL) 2940
1D Compatibility (HY) -17600 + (ID) 4050
Total energy: -203842.0 ( -114.91 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1VM6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VM6-query.scw
PDB file :
Tito_Scwrl_1VM6.pdb
: