Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIRDTLHDLHRPLGDTGLAVSPLGLGTVKFGRDQGVKYPSGFTIPDDREAADLLALARDLGINLIDTAPAYGR--SEERLGPLLRGQREHWVIVSKVGEEFVDGQSVFDFSAAHTRRSVERSLKRLETDRIELVLVHSDGNDLDILENSEVYPTLAALKREGLIGAYGLSGKTVEGGLRALR--EGDCAMVTYNLNERAERPVIEYAAAHAKGILVKKALASGHACLG------------------------AGQDPVRASFELVFDQPGVAAAIVGTINPLHLAHNVAMAA-QALKKA |
| 1YNP Chain:A ((20-298)) | -----HMKK-RQLGTSDLHVSELGFGCMSLGT-------------DETKARRIMDEVLELGINYLDTADLYNQGLNEQFVGKALKGRRQDIILATKV-------------SKAYIKEAVKDSLRRLQTDYIDLYQLHGGTIDD---PIDETIEAFEELKQEGVIRYYGISSIRPNVIKEYLKRSNIVSIMMQYSILDRRPEEWFPLIQEHGVSVVVRGPVARGLLSRRPLPEGEGYLNYRYDELKLLRESLPTDRPLHELALQYCLAHDVVATVAAGASSIDQVKANVQAVEATPLTAE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -127238 for 1924 contacts (-66.1/contact) +
2D Compatibility (PS) -25379 + (NN) -12024 + (LL) 1548
1D Compatibility (HY) -14000 + (ID) 3150
Total energy: -180243.0 ( -93.68 by residue)
QMean score : 0.545
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