Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEMRNTTPDFILLGLFNHTRAHQVLFMMVLSIVLTSLFGNSLMILLIHWDHRLHTPMYFLLSQLSLMDMMLVSTTVPKMAADYLTGSKAISRAGCGVQIFFLPTLGGGECFLLAAMAYDRYAAVCHPLRYPTLMSWQLCLRMTMSCWLLGAADGLLQAVVTLSFPYCGAHEIDHFF--CETPVLVRLACADTSVFENAMYICCVLMLLV---------PFSLILSSYGLILAAV------------LHMRSTEARKKAFATCSSHVA-----VVGLFYGAAIFTYMRPKSHRSTNHDKVVSAFY----TMFTPLLNPLIYSVKNSEVKG--------ALKRWLGTCVNIK----HQQNEAHRSR------------------------------------------------------------------------------------------------------------------ |
| 3ODU Chain:A ((37-502)) | PCFREENANF----------NKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVIT-LPFWAVDAVANWYF-GNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVGVWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172724 for 1988 contacts (-86.9/contact) +
2D Compatibility (PS) -31715 + (NN) -1507 + (LL) 1064
1D Compatibility (HY) -20400 + (ID) 2600
Total energy: -227882.0 ( -114.63 by residue)
QMean score : 0.197
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