Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAAKNSSVTEFILEGLTHQPGLRIPLFFLFLGFYTVTVVGNLGLITLIGLNSHLHTPMYFFLFNLSLIDFCFSTTITPKMLMS-----------------FVSRKNIISF---TGC--------MTQLFFFCFFVVSESFILSAMAYDRYVAIC-----------------NPLLYTVTMSCQVCLLLLLGAYGMGF---AGAMAHTGSIMNLTFCADNLVNHFMCDI-LPLLELSCNSS----YMNELVVF---------IVVAVDVGMPIVTVFISYALILSS------------ILHNSSTEGRSKAFSTCSSHIIVVSLFFGSGA---FMYLK----------PLSILPLEQGKVSSLFYT---IIVPVLNPLIYSLR--NKDVKVALRRTLGRKIFS---- |
| 1OKE Chain:A ((1-394)) | MRCIGISNRDFV-EGVSGGSWVDIVLEH---GSCVTTMAKNKPTLDFELIKTEAKQP-------ATLRKYCIEAKLTNTTTESRCPTQGEPTLNEEQDKRFVCKHSMVDRGWGNGCGLFGKGGIVTCAMFTCKKNM-EGKIVQPENLEYTVVITPHSGEEHAVGNDTGKHGKEVKITPQSSITEAELTGYGTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKETLVTFKNPHAKKQDVVVLGSQEGAMHTALTGATEIQMSSGNLLFTGHLKCRLRMDKLQLKGMSYSMCTGKFKVVKEIAETQHGTIVIRVQYEGDGSPCKIPFEIMDLEKRHVLGRLITVNPIVTEKDSPVNIEAEPPFGDSYIIIGVEPGQLKLNWFKK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OKE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -267628 for 1964 contacts (-136.3/contact) +
2D Compatibility (PS) -31626 + (NN) 10974 + (LL) 1424
1D Compatibility (HY) -7600 + (ID) 3000
Total energy: -297456.0 ( -151.45 by residue)
QMean score : 0.091
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