Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELPYIEKRSQ-DVGITINAASNVSDVGKAFPGQPSIAHDSDIEGLKRLATAMKKNGAKALVQIHHGGAQALPELIP-DGDVVAPSPISLKSF--------GQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWAN----QYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEE-AES--PGITMEITEELVNKISHM------PIDYIHVSMMDTHATTRE--GKY--AGQ-E-RLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK |
2HSA Chain:B ((17-390)) | ------PLFSPYKM-GKFNLSHRVVLAPMTRCRA-LNNIPQAALGEYYEQRATAG-GFLITEGTMISPTSAGFPHVPGIFTKEQVREWKKIVDVVHAKGAVIFCQLWHVGRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYEISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAI----GAD-RVGVRVSPAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAY--QGTFICSGGY-TRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAP--LNKY----NRKTFYTQDPVVGYTDYPFL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2HSA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -136751 for 3019 contacts (-45.3/contact) +
2D Compatibility (PS) -37177 + (NN) -19340 + (LL) 752
1D Compatibility (HY) -23200 + (ID) 4250
Total energy: -219966.0 ( -72.86 by residue)
QMean score : 0.595
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