Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLERQKLLAKVAYLYYMEGKSQSEIANELGIYRTTISRMLAKAREEGLVRIEISDFNPEI-FQLESYFKSKYHLKDIEIVSSRKDSDTSEIEKDLAHVAAAMIRKKIKEND-KVGIAWGRTLSKVVEAMRPHPVSQVSFVPLAGGPSHINARYHVNTLVYEM-SRRFQGSCTFI-NATLVQENANLAKGILTSKYFEGLMDNWEKLDVAIVGVGGKPKSNEQQWLDL-LNQDDFQCLDEEAAVGEITCRFFNHSGDPVNQHLAKRTIGITLEQLQKVPNRIAVAHGNYKAAALLAVLKKGYINHLVTDFSTALNILRLDKDTFVDTIYQKS |
| 2GNP Chain:A ((4-265)) | --------------------------------------------------------NFDTNMFKLENYVKEKYSLESLEIIPNEFDDTPTILSERISQVAAGVLRNLI-DDNMKIGFSWGKSLSNLVDLIHSKSVRNVHFYPLAGGPSHIHAKYH-VNTLIYEMSRKFHGECT-FMNATIVQENKLLADGILQSRYFENLKNSWKDLDIAVVGI-GDFSNKGKHQWLDMLTEDDFKELTKVKTVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEEDGD---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GNP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -147622 for 2091 contacts (-70.6/contact) +
2D Compatibility (PS) -28138 + (NN) -19129 + (LL) 6476
1D Compatibility (HY) -26400 + (ID) 5500
Total energy: -220313.0 ( -105.36 by residue)
QMean score : 0.444
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