Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MCKYKAIIFDMDGVLFDTELFYYKRRERFLKQHGITIDHLPMNFFIGGNMKQVWKSVLGDQYDTWDIDKLQQDYSRYKEDNPLPYKDLIFQDCKRVIEKLHHKGYLLGLASSSTRHDIMLALESFNLDTYFKVILSGEEFSESKPNPAIYNRAAELLDI-PKQQILIVEDSEKGITAGIAAGIDVWAIEDK-YFGMN--QSQANVLVSDLSQFFVKLDNY
3SD7 Chain:A ((26-239))
KKNYEIVLFDLDGTLTDPKEGITKSIQYSLNSFGIKEDLENLDQFIGPPLHDTFKEYYKFED--KKAKEAVEKYREYFADK-GIFENKIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDKVIMVGDRKYDIIGAKKIGIDSIGVLYGYGSFEEISESEPTYIVENVESIKDILL--
General information:
TITO was launched using:
RESULT:
Template:
3SD7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113018 for 1732 contacts (-65.3/contact) +
2D Compatibility (PS) -22587 + (NN) -8628 + (LL) -320
1D Compatibility (HY) -9200 + (ID) 2250
Total energy: -156003.0 ( -90.07 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_3SD7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SD7-query.scw
PDB file :
Tito_Scwrl_3SD7.pdb
: