Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--M-RLDKFLVECGLGSRTQVKLILKKKQISVNGNSETSPKVQVDEYRDEIKYNGTLVSYEKFVYYM-LHKPKGVISATDDPSHKTVLDLLDKTARDKAVFPVGRLDIDTTGLLLI-TNNGELAHKMLSPKKHVDKCYEAKISGIMTEDDILAFDKGIILKDFTCLPALLEIVEVNQVKKQSLVKITIKEGKFHQVKR-MVAACGKEVLELKRLRMGNLQLDKQLESGQWRRLTIKEIEKLEKYMQ
1KSK Chain:A ((1-234))
GSHMRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVL-MTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRLTISEGRYHQVKRMFAAV-GNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV----
General information:
TITO was launched using:
RESULT:
Template:
1KSK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64729 for 1569 contacts (-41.3/contact) +
2D Compatibility (PS) -24093 + (NN) -5629 + (LL) 1420
1D Compatibility (HY) -10400 + (ID) 3950
Total energy: -107381.0 ( -68.44 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_1KSK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KSK-query.scw
PDB file :
Tito_Scwrl_1KSK.pdb
: