Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLIVLAGTIGAGKSSLAAALGQHLG-TDVFYEAVDN------NPVLDLYYQDPKKYAFLLQIFFLNKRFQSIKEAY-------KANNNVLDRSIFEDE-LFLTLNYKNGNVTKTELDIYKELLANMLEELEGMPKKRPDLLVYIDVSFDKMLERIDKRGRSFEQVDSNPELYDYYKQVHSEYPEWYEN---------YDVSPKIRIDGNKLDFVKNPEDLQHVLDTIDSELQKLDLL
2OCP Chain:A ((3-241))
RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFA--SRITLHGFIYLQASPQVCLKRLYQRAREEEK---GI-ELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVND-DFSEEVTKQEDLMREVNTFVKNL---
General information:
TITO was launched using:
RESULT:
Template:
2OCP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89636 for 1538 contacts (-58.3/contact) +
2D Compatibility (PS) -21770 + (NN) -10301 + (LL) 680
1D Compatibility (HY) -14400 + (ID) 2250
Total energy: -137677.0 ( -89.52 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_2OCP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OCP-query.scw
PDB file :
Tito_Scwrl_2OCP.pdb
: