Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVATLIIIRGNSASGKSKIAKQLQAELG---ENTLLLSQDYLRREMLGTKDGENTTTIPLL---INLLNYGYHNCSYIILEGILRSDWYTPVWKHILKHNPNNTYAYYYDLSFQETVKRHSTRLKSLEFGEDSLARWWLE---KDFLKEIPEKILTKAM-SLEDVKKLIMTDVLP
2YVU Chain:A ((12-182))
-KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLY-KKALKGELENFTGITDPYEP-PENPQLVLDTESNTIEHNVSYLYSLVKA
General information:
TITO was launched using:
RESULT:
Template:
2YVU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58490 for 1215 contacts (-48.1/contact) +
2D Compatibility (PS) -16659 + (NN) -3962 + (LL) 356
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: -87255.0 ( -71.81 by residue)
QMean score : 0.397
(partial model without unconserved sides chains):
PDB file :
Tito_2YVU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YVU-query.scw
PDB file :
Tito_Scwrl_2YVU.pdb
: