Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRIMGLDVGSKTVGVAISDPLG--FTAQGLEIIKID----EESGNFGFDRLAELVKEYKVDKFVVG-LPKNMNNTSGPRVEASQAYGDKITELFNLPV-EYQDERLTTV----------QAERMLVEQADISRGKRKKVIDKLAAQLILQNYLDRMF-
1HJR Chain:A ((1-158))
AIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQ
General information:
TITO was launched using:
RESULT:
Template:
1HJR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58817 for 1046 contacts (-56.2/contact) +
2D Compatibility (PS) -14951 + (NN) -3399 + (LL) 0
1D Compatibility (HY) -4800 + (ID) 1200
Total energy: -83167.0 ( -79.51 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_1HJR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HJR-query.scw
PDB file :
Tito_Scwrl_1HJR.pdb
: