Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNVKKHHLAYGAITLVALFSCILAVMVIFKSSQVTTESLSKADKVRVAKKSKMTKATSKSKVEDVKQAPKPSQASNEAPKSSSQSTEANSQQQVTASEEAAVEQAVVTENTPATSQAQQAYAVTETTYRPAQHQTSGQVLSNGNTAGAIGSAAAAQMAAATGVPQSTWEHIIARESNGNPNVAN---ASGASGLFQTMPGW-GST-------------------ATVQDQVNSAIKAYRAQGLSAWGY |
| 1HML Chain:A ((39-124)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------GIALPELICTMFHTSGYDTQAIVENNESTEYGLFQISNKLWCKSSQVPQSRNICDISCDKFLDDDITDDIMCAKKILDIKGIDYWLA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1HML.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -13816 for 357 contacts (-38.7/contact) +
2D Compatibility (PS) -6756 + (NN) -2474 + (LL) 12400
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -14046.0 ( -39.34 by residue)
QMean score : 0.507
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