Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVLLLLAVVIMAFGSIQVQGSLLEFGQMILFKTGKRADVSYGFYGCHCGVGGRGSPKDATDWCCVTHDCCYNRLEKRGCGTKFLTYKFSYRGGQISCSTNQDSCRKQLCQCDKAAAECFARNKKSYSLKYQFYPNKFCKGKTPSC
4HG9 Chain:A ((1-122))
---------------------HLLQFRKMIKKMTGKEPVVSYAFYGCYCGSGGRGKPKDATDRCCFVHDCCYEKV--TGCDPKWDDYTYSWKDGDIVCG-GDDPCKKEVCECDKAAAICFRDNLKTYKKRYMAYPDILCSSKSEKC
General information:
TITO was launched using:
RESULT:
Template:
4HG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40218 for 927 contacts (-43.4/contact) +
2D Compatibility (PS) -13370 + (NN) -10955 + (LL) 2868
1D Compatibility (HY) -12000 + (ID) 3150
Total energy: -76825.0 ( -82.87 by residue)
QMean score : 0.271
(partial model without unconserved sides chains):
PDB file :
Tito_4HG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HG9-query.scw
PDB file :
Tito_Scwrl_4HG9.pdb
: