Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLGITVLAALLACASSCGVPSFPPNLSARVVGGEDARPHSWPWQISLQYLK-NDTWRHTCGGTLIASNFVLTAAHCISN---TRTYRVAVGKNNLEVEDEEGSLFVGVDTIHVHKRWNALL--LRNDIALIKLAEH----VELSDTIQVACLPEKDSLLPKDYPCYVTGWGRLWTNG-PIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCAGG-DGVISACNGDSGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWINEKMQL
3MHW Chain:U ((1-246))
-----------------------------IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNS-NTQGEMKFEVENLILHKDYSAD-LAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCS-LQGRMTLTGIVSWGR--GCALKDKPGVYTRVSHFLPWIRSHTK-
General information:
TITO was launched using:
RESULT:
Template:
3MHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -170641 for 2005 contacts (-85.1/contact) +
2D Compatibility (PS) -25156 + (NN) -8327 + (LL) 2668
1D Compatibility (HY) -14000 + (ID) 3700
Total energy: -219156.0 ( -109.30 by residue)
QMean score : 0.428
(partial model without unconserved sides chains):
PDB file :
Tito_3MHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MHW-query.scw
PDB file :
Tito_Scwrl_3MHW.pdb
: