Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPPLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPRGAHFLAKSLDDALRLIEQPELASKVDMVWIVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLGKYKLLPEYPGVLSEVQEEKGIKYKFEVYEKKD
2DHF Chain:A ((4-185))
----LNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN-
General information:
TITO was launched using:
RESULT:
Template:
2DHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118804 for 1342 contacts (-88.5/contact) +
2D Compatibility (PS) -20017 + (NN) -10495 + (LL) 284
1D Compatibility (HY) -26000 + (ID) 8250
Total energy: -183282.0 ( -136.57 by residue)
QMean score : 0.658
(partial model without unconserved sides chains):
PDB file :
Tito_2DHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DHF-query.scw
PDB file :
Tito_Scwrl_2DHF.pdb
: