Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPLLRNEFKYFQRMTTTSSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEPPQGAHFLAKSLDDALKLIEQPELASKVDMVWVVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLEKYKLLPEYPGVLSEIQEEKGIKYKFEVYEKKD
2DHF Chain:A ((4-185))
----LNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN-
General information:
TITO was launched using:
RESULT:
Template:
2DHF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -118235 for 1342 contacts (-88.1/contact) +
2D Compatibility (PS) -19851 + (NN) -9644 + (LL) 284
1D Compatibility (HY) -25600 + (ID) 8250
Total energy: -181296.0 ( -135.09 by residue)
QMean score : 0.642
(partial model without unconserved sides chains):
PDB file :
Tito_2DHF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DHF-query.scw
PDB file :
Tito_Scwrl_2DHF.pdb
: