Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADPRPDPDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQAELPGFVPPTAAGHAGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHLNLTARSPLVG-------GEFVDLTDAYSPRLRELA----RQSDPQLAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTNLAAGITG-EPLSHAEVLAAGAASATRMGALLADVIARF |
4NSN Chain:A ((26-295)) | -------QEQHYHEAASFLSSRLP-GDAKTAIILGSGLGELAEKIENKT-VIPYNEIPHFAQATAVGHKGNIIGGILGGTPVVAMQGRFHYYEGYSMDQVTFPIRVMKLLGIENLFVSNAAGGINTSFKVGDLMIICDHINNLP-NPLIGPNMDMFGVRFPDMTRAYDREFIAKAKGIAQELNIPVKEGVYVGLTGPSYETPAEYKFWGQVGGDAIGMSTVPEVIVARHTGIRVFGMSVITNEGYHFADDFVNDEQDVIRAANAASEKMGAIFARLIAAV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NSN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192193 for 2269 contacts (-84.7/contact) +
2D Compatibility (PS) -28089 + (NN) -8750 + (LL) 376
1D Compatibility (HY) -19600 + (ID) 4600
Total energy: -252856.0 ( -111.44 by residue)
QMean score : 0.667
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