Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNASAASLNDSQVVVVAAEGAAAAATAAGGPDTGEWGPPAAAALGAGGGANGSLELSSQLSAGPPGLLLPAVNPWDVLLCVSGTVIAGENALVVALIASTPALRTPMFVLVGSLATADLLAGC---GLILHFVFQ-YLVPSETVSLLTVGFLVASFAASVSSLLAITVDRYLSLYNALTYYSRRTLLGVHLLLAATWTVSLGLGLLPVLGW-NCLAE--RAACSV---VRPLARSHVALLSAAFFMVFGIMLHLYVRICQVVWRHAHQIALQQHCLAPPHLAATRKGVGTLAVVLGTFGASWLPFAIYCV-VGSHEDPAVYTYATLLPATYNSMI---NPIIYAFRNQEIQRALWLLLCGCFQSKVPFRSRSPSEV--- |
| 1F88 Chain:A ((1-348)) | MNGTEGP----------------NFYVPFSNKTGVVRSPFE---------------APQYYLAEPWQFSMLAAYMFLLIMLG----FPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNF-RFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLV-----FTVKEAAASATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTVSKTETSQVAPA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -238076 for 2562 contacts (-92.9/contact) +
2D Compatibility (PS) -32643 + (NN) -12998 + (LL) 2472
1D Compatibility (HY) -20800 + (ID) 3050
Total energy: -305095.0 ( -119.08 by residue)
QMean score : 0.214
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