Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ---------------------------------MENNTEVSEFILLGLTNAPELQVPLFIMFTLIYLITLTGNLGMIILIL---------LDSHLHTPMYFFLSNLSLAGIGYSSAVTPKVLTGLLIEDKAISYSACAAQMFFCAVFATVENYLLSSMAYDRYAAVCNPLHYTTTMTTRVCACLAIGCYVIGFLNASIQIGDTFRLSFCMSNVIHHFFCDKPAVITLTCSEKHISELI-----LVLISSF---NVFFALLVTLI-----------SYLFILIT------ILKRHTGKGYQKPLSTCGSHLIAIFLFYITVIIMYIRPSSSHSMDTDKIASVFYTMIIPMLSPIVYTLRNKDVKNAFMKVVEKAKYSLDSVF------------------------------ |
4PG7 Chain:A ((20-446)) | HMKKLNIALLGLGTVGSGVVKIIEENRQQIQDTLNKDIVIKHILVRDKSKKRPLNISQYHLTEDVNEILNDDSLDIIVEVMGGIEPTVDWLRTALKNKKHVITANKDLLAVHLKLLEDLAEENGVALKFEASVAGGPNNISKFMGILNGTSNFILSKMTKEQ-----TTFEEALDEAKRLGFAEADPTDDVEGVDAARKVVITSYLSF--NQVIKLNDVKRRGISGVTLTDINVADQLGYKIKLIGKGIYENGKVNASVEPTLIDKKHQLAAVEDEYNAIYVIGDAVGDTMFYGKGAGSLATGSAVVSDLLNVALFFESTLPPHFELKTDKTREMEK--SNFFVVVNHVKGSIENFENELKAILPFHRSLRVANYDNQSYAAVIVGLESSPEELITKHGYEVDKVYPVEGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 4PG7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -261756 for 2138 contacts (-122.4/contact) +
2D Compatibility (PS) -31906 + (NN) 4545 + (LL) 1240
1D Compatibility (HY) -4000 + (ID) 2350
Total energy: -294227.0 ( -137.62 by residue)
QMean score : 0.089
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