Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLMASTTSAVPGHPSLPSLPSNSSQERPLDTRDPLLARAELALLSIVFVAVALSNGLVLAALARRGRRGHWAPIHVFIGHLCLADLA-VALFQVLPQLAWKATDRFRGPDALCRAVKYLQMVGMYASSYMILAMTLDRHRAICRPMLAYRHGSGAHWNRPVLVAWAFSLLLSLPQLFIFAQRNVEGGSGVTDCWACFAEPWGR--RTYVTWIALMVFVAPTLGIAACQVLIFREI-------HASLV----------PGPSERPGGRRRGRRTGSPGEGAH-----VSAAVAKTVRMTLVIVVVYVLCWAPFFL---VQLWAAWDPEAPLE-------GAPFVLLMLLASLNSCTNPWIYASFSSSVSSELRSLLCCARGRTPPSLGPQDESCTTASSSLAKDTSS |
4XNV Chain:A ((38-382)) | -----------------------SFKCAL-TKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKP--WSGISVYMFNLALADFLYVLTLPALIFYYFNKTDWIFG-DAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYPKSLGRLKKKNAICISVLVWLIVVVAISP---ILFYSGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNSCVNPILYFLAGDTFRRR------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -234658 for 2162 contacts (-108.5/contact) +
2D Compatibility (PS) -32384 + (NN) -23484 + (LL) 1540
1D Compatibility (HY) -22000 + (ID) 3400
Total energy: -314386.0 ( -145.41 by residue)
QMean score : 0.302
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